| Surname | Patchkovskii ( )
|
| Given name | Serguei ( )
|
| Birth date | October 2, 1968 |
| Birth place | Novosibirsk, Russia |
| Nationality | Russian |
| Civil status | Married |
| Address (office) | Dept. of Chemistry, University of Calgary, 2500 University Dr. NW, Calgary, Alberta, T2N 1N4 Canada |
| Address (home) | 2905 Unwin Rd. NW apt. 318B, Calgary, Alberta, T2N 4M5 |
| Phone (office) | (403)-220-8204 |
| Phone (home) | (403)-282-0274 |
| FAX | (403)-289-9488 |
| patchkov@ucalgary.ca | |
| Status in Canada | Permanent resident |
| Languages | Russian (fluent), English (fluent), German (with difficulty) |
A highly qualified theoretical chemist (M.Sc.(hons.) Novosibirsk 1990, Ph.D.(summa cum laude) Zürich 1997) with 13 years of experience in information technology and strong problem-solving skills is looking for a faculty position in theoretical or physical chemistry or related field. May also consider an industrial placement in chemical research or information technology offering access to cutting-edge facilities and adequate incentives.
| 02/1997 | Awarded Doctor of Philosophy degree (summa cum laude) for the Dissertation Thesis (in English) on Analytical Computation of First-Order Response Properties in MNDO Methods |
| 03/1993-03/1997 | Department of Philosophy II (Postgraduate Studies) of the University of Zürich, Switzerland. Supervisor: Prof. Dr. W. Thiel of the Institute for Organic Chemistry of the University of Zürich |
| 06/1990 | Awarded Diploma with Honors in Chemistry (Master of Sciences equivalent) for the Diploma Thesis (in Russian) on Effects of solvation on reactivity of pentacoordinated phosphorus in model enzymes (semiempirical study) Supervisor: Dr. A. Voityuk of the Bioorganic Chemistry Institutre, Novosibirsk |
| 09/1985-06/1990 | Department of Natural Sciences of the Novosibirsk State University in Novosibirsk, Russia |
| 09/1984-06/1985 |
Lavrentyev's school for gifted children with specialization in mathematics
and physics ( ) in Novosibirsk, Russia
|
| 09/1975-06/1984 | School No 111 in Novosibirsk, Russia |
| 03/1998-present | Full-time Postdoctoral Research Associate at the Department of Chemistry of the University of Calgary |
| 03/1997-03/1998 | Full-time Postdoctoral Research Associate at the Institute for Organic Chemistry of the University of Zürich, Switzerland |
| 03/1993-03/1997 | Full-time Ph. D. Candidate at the Institute for Organic Chemistry of the University of Zürich, Switzerland |
| 11/1991-03/1993 | Full-time research associate at Institute for Bioorganic Chemistry of the Russian Academy of Sciences |
| 09/1991-01/1993 | Half-time Assistant Instructor in Physical Chemistry at the Natural Sciences Department of the Novosibirsk State University |
| 10/1990-11/1991 | Full-time research student at the Institute for Bioorganic Chemistry of the Russian Academy of Sciences |
| 07/1988-08/1989 | Half-time Computer Programmer at the Laboratory of Automated Education Systems of the Novosibirsk State University |
| 06/1986-05/1988 | Half-time Computer Systems Operator at the Computational Center of the Novosibirsk State University |
| Computer languages: | C, Fortran, Perl, Mathematica, awk, and 80x86 assembler, C++, Java, HTML, Prolog, C shell, Bourne shell, PDP-11 and IBM System/360 assembler language, VRML 1.0 |
| Graphics programming: | Low-level IBM PC, Microsoft Windows, X11 Window System (Unix) |
| Network programming: | NetBIOS (IBM PC), TCP/IP (Unix) |
| Special skills: | Low-level device driver programming on MS DOS and MS Windows systems; Near real-time audio signal processing; Embedded systems programming |
| Project management: | Make, RCS (Revision Control System) |
| Performance analysis: | prof, gprof, pixie, SGI Workshop tools, OSF/1 atom (Unix), Borland Turbo Profiler (MS DOS) |
| Performance tuning: | KAP and VAST preprocessors (Unix), cache blocking and dependence elimination, automated code generation and cloning, reduction to BLAS routines |
| Systems administration: | SGI IRIX, IBM AIX, Compaq Tru64 (Unix), MS DOS, MS Windows |
| Quantum chemistry applications: | Gaussian 92 and 94, Turbomole, MOLPRO, ADF (ab initio and density functional); Ampac, Mopac (semiempirical) |
1998-1999 Construction of the COBALT cluster - one of the largest dedicated computational chemistry resources to date. COBALT (Computers On Benches All Linked Together) consists of 94 Compaq Alpha Personal Workstations 500au connected by a dedicated Fast Ethernet switch. All nodes, which together contain more than 21 gigabytes of memory and 300 gigabytes of scratch disk space are controlled by distributed queuing system (DQS) and can be used as a single computational chemistry resource with PVM and MPI parallel programming libraries. With the peak floating point performance on each node of 1 gigaflop per second, the total construction cost (including all hardware and software) is just cdn$3680 (US$2460 at the February 10, 1999 exchange rate) per gigaflop. Configuration and capabilities of the Cobalt cluster are described on the Internet at http://www.cobalt.chem.ucalgary.ca/. http://www.cobalt.chem.ucalgary.ca/cobalt/gallery.html provides a short guided tour of the Cobalt cluster hardware.
1993-1998 Analytical derivatives of the energy for MNDO-type wavefunctions: Computational routines for the evaluation of the energy gradients for variational and non- variational wavefunctions (including CI), second derivatives of the energy for variational wavefunctions, and NMR shielding tensors in the GIAO-SCF approximation. Computationally efficient expressions for the energy derivatives taking into account simplifications arising from MNDO approximation were developed and verified with prototype implementations in C++ and Mathematica. The final high-performance computer program was implemented in portable Fortran-77, and consists of 75,000 lines of human-produced code in addition to 20,000 lines of computer-generated integral routines. The code is tuned for optimal performance on cache-based workstation and vector supercomputers. Compared to previously available numerical techniques, speedups of several orders of magnitude are obtained for large systems. The code is used extensively in the research performed at the Organic Chemistry Institute of the University of Zürich, as well as elsewhere. It is scheduled for inclusion in the next publicly available version of Prof. Dr. W. Thiel MNDO97 program, and in a future version of UniChem quantum chemistry package (distributed by Oxford Molecular Group, http://www.oxmol.com).
1990-1993 MolDemo: Program for visualization of large molecular systems and their properties on IBM PC-compatible computers, implemented for the Bioorganic Chemistry Institute in Novosibirsk. The program, consisting of 30,000 lines of C and IBM PC assembler code, supports near real-time photorealistic display of molecules with up to 5,000 atoms. Other features of the programs include: Editing of the three-dimensional molecular structures; Construction of small molecules from the libraries of pre-existing fragments; Automated generation of the Z-matrix for use with external quantum-chemical programs; Flexible template-controlled conversion from/to external formats; High quality hardcopy output to printers, plotters, and to graphic files, with screen-independent resolution. MolDemo was used extensively in the studies of the structure and reactivity of proteins and nucleic acids at the Institute. MolDemo (including the complete source code) is freely available on the Internet at http://www.cobalt.chem.ucalgary.ca/ps/moldemo/
1988-1989 GOR: Graphics editor for an embedded LSI-11 computer, implemented for the Laboratory of Automated Education Systems (Novosibirsk State University). The program, consisting of 8,000 lines of C and PDP-11 Assembler code, supports basic interactive image editing operations on an embedded LSI-11 microcomputer with 16 kilowords of memory.
TrueView, which simulates 262144-color video mode on any VGA adapter by real-time mixing of specially designed color palettes. MS-DOS binary executable of TrueView (which accesses hardware at a very low level and will not work inside the DOS box of Windows or Windows NT) is available at http://www.simtel.net/pub/simtelnet/msdos/vga/trueview.zip or http://www.cobalt.chem.ucalgary.ca/ps/hobby/trueview.zip.
NetBIOS Assist (NBA), which provides remote console control for a PC connected to a NetBIOS network. NBA will not be able to control a Windows session. It is available at http://www.simtel.net/pub/simtelnet/msdos/lan/nba102.zip or http://www.cobalt.chem.ucalgary.ca/ps/hobby/nba102.zip.
pfstat, which displays the list of the currently open files on a DOS or Windows computer by accessing undocumented internal tables of the operating system. Pfstat (including the complete C source code) is available at ftp://garbo.uwasa.fi/pc/sysutil/pfstat.zip or http://www.cobalt.chem.ucalgary.ca/ps/hobby/pfstat.zip.
hdbios, which provides a replacement for IDE hard disk ROM BIOS on IBM PC compatible computers capable of supporting a secondary hard disk controller. It is available at http://www.cobalt.chem.ucalgary.ca/ps/hobby/hdbios.zip.
audiochat, which provides an audio connection between Silicon Graphics and Sun workstations over Internet, using audio-specific compression techniques (CCITT G.711 u- and a-law, Fourier codec) to reduce communication bandwidth. Audiochat (including the complete source code) is available at http://www.cobalt.chem.ucalgary.ca/ps/hobby/audiochat/
Emulating Debugger (EDB), which provides a complete software emulation of Intel 8086 and 8088 CPUs (including many undocumented instructions and features) for the purpose of debugging ill-behaved 8086 programs in the MS-DOS environment. EDB, along with the complete C source code, is available at http://www.cobalt.chem.ucalgary.ca/ps/hobby/edb_gnu.zip.
Port of the public domain version of Mopac (a popular semiempirical quantum chemistry program) to the 32-bit MS-DOS platform using f2c and GCC. The executable binaries and the modified source code are available in the archives of the computational chemistry mailing list at ftp://ftp.ccl.net/pub/chemistry/software/MS-DOS/mopac_for_dos/mopac7/, or at http://www.cobalt.chem.ucalgary.ca/ps/hobby/mopac7/.